Data analyses of change in protein exposed to clinical drug and radiation

Project Description

I have a time series data derived from exposing cancer cells to radiation and clinical drugs (perturbations) in a combinatorial fashion with appropriate controls. I would like to understand this data better as I am confounded by the component of time. The data consists of 182 proteins that has been interrogated with the above perturbations for 11 time points. A basic workflow beginning with clustering, PCA, p and z scores, volcano plots, parametric or non parametric analyses, Bayesian analyses and differential equations comes to my mind. I would like some assistance in generating this data with some explanations as well.